The boun record defines sets of distance constraints which can be applied during molecular dynamics simulations. It is not necessary to have this record in order to run constrained molecular dynamics. It is possible to use the equilibrium bond lengths in the bond record to constrain bond distances for instance. The boun record has the form
boun Nclass 1 Nbound atomi atomj dij ... ... ... ... ...
where Nclass is the number of classes of constraints. Currently only one class, distance constraints, is available. Thus, Nclass must have the value 1. Following the header line is the data for the first class (distance constraints). The data starts with the class identifier which is the value 1, followed by the number of distance bounds Nbound, then Nbound lines containing three fields each. The fields are the atom pairs to be bounded atomi and atomj, and the distance to which they are to be bounded dij.
boun 11 51 2 34.0 2 3 34.0 3 4 34.0 4 5 34.0 5 1 34.0
Five atoms are laid single file on a closed curve (of indeterminate shape) and each atom is constrained to be 34Å from its two neighbors.
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