Descriptor File Format
mors: morse energy term

The mors morse bond energy is the sum of Nmorse terms where each term has the form:


Eo
{ 1 - exp[ -a( bij - bo ) ] }2

where Eo is a base energy [CEU], a a stretch constant [Å-1], bij the current bond length between the atoms atomi and atomj and bo the equilibrium or ideal bond length [Å]. Very roughly, Eo determines the height of the energy barrier to bond breakage, and a controls the width of the energy well.

The mors record in the descriptor has the form:

mors
Nmorse

atomi
atomj
Eo
a
bo

...
...
...
...
...

The mors record starts with the keyword mors followed by the number of morse bonds Nmorse, then Nmorse lines of five fields each: the pair of atoms that make up the bond atomi and atomj, the base energy Eo, the constant a and the equilibrium bond length bo. Example:


mors 1
3   56   10453   1.5   1.54


A single morse bond between atoms 3 and 56 with a base energy of 10453 CEU (25 kcal/mol) and an equilibrium bond length of 1.54Å.


Details of Descriptor Records
intro
DES1
note
type
ivms
name
bond
mors
angl
angn
tors
itor
iton
nbn+
nbn-
ele+
ele-
vdw+
vdw-
abhb
noen
surf
stud
vlat
boun
lock

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