Descriptor File Format

tors: torsion energy term

The torsion energy is the sum of Ntorsion terms where each term has the form:


ktors
{ 1 + f cos( p * tijkl ) }

where ktors is a force constant, tijkl is the current torsion angle spanned by four atoms numbered atomi, atomj, atomk and atoml, f is a phase constant and p is the period. Normally f is either 1 or -1 but any number may be specified. p must be an integer from 1 to 6.

The graph on the left ( p = 3, ktors = 2, f = ±1/2) shows that p determines the number of periods in the range 0 to 180 degrees, ktors determines the height of the centerline of the cosine curve and the magnitude of f controls the displacement of the centerline from zero and the sign of f determines whether a maximum or minimum energy is attained at zero angle (among other things).

The torsion record in the descriptor file has the form:

tors
Ntorsion

atomi
atomj
atomk
atoml
p
ktors
f

...
...
...
...
...
...
...

The torsion record starts with the keyword tors followed by the number of torsions Ntorsion, then Ntorsion lines of seven fields each: the four atoms that define the torsion atomi, atomj, atomk and atoml, the period p, the force constant ktors and the phase f. The order of the four atom numbers is significant (1,3,2,4 does not constitute the same torsion angle as 1,2,3,4) although the sign of the torsion angle is not (1,2,3,4 has the same magnitude as but is opposite in sign to 4,3,2,1). Example:


tors 5
 1    2    3   4   2   50.16   1.0
 6    2    5   7   2   710.6   1.0
 8    5    9  10   1   204.8   -1.0
11   12   13  14   5   8.361   0.5
13   15   16   9   3   41.80   -1.0

Five torsions showing a range of periodicities (1, 2, 3 and 5), and phases (±1 and 1/2).


Details of Descriptor Records
intro
DES1
note
type
ivms
name
bond
mors
angl
angn
tors
itor
iton
nbn+
nbn-
ele+
ele-
vdw+
vdw-
abhb
noen
surf
stud
vlat
boun
lock

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