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DEVELOPMENT
Development, testing and performance benchmarks; contact information;
plans for a major revision of yammp.
DOWNLOAD
Yammp is available for SGI workstations. Download the programs,
installation instructions, and documentation in electronic format;
legal stuff.
MANUALS
Complete documentation to the programs, description of the file formats
and the command language
TUTORIALS
Tutorials are being developed, introduction to molecular simulations,
alkanes
TECHNICAL
Discusses simulation methods and how they are implemented; the power
series force field terms; programming new force field terms and
structure refinement
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UPGRADE
This software package is now obsolete. You
can request a copy of Yammp 1 and use it. (Write to to the address
below, see the electronic form for the information that we need but
electronic submissions are not accepted. A valid email address is
required, the link will be emailed to you.) You are encouraged to
switch
to YUP or Yammp 2. If you have been using VLAT, please
switch to Yup.vlat or better still, Yup.scx.
Both of the latter programs are available as part of Yammp2.
OVERVIEW
Yammp is a package for molecular simulations which has been
used for standard molecular models but the emphasis is on reduced
representation models. There are several methods for Energy
Minimization, Molecular Dynamics and Monte Carlo.
NEWS
July 7, 2005: Yammp 2 or YUP is now available.
OTHER SITES
MMTSB
Yammp is a component of a NIH Research Resource to provide Multiscale
Modeling Tools for Structural Biology.
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