2001 to 2003

Harvey Lab Publications: 2001 - 2003

Harvey Lab. Publications
1972...1997

1998...2000

2001...2003

2004...2006
Current

The Harvey Lab

Paper Get
(Type) Size [bytes]

Structural Studies of the tRNA Domain of tmRNA
S.M. Stagg, A.A. Frazer-Abel, P.J. Hagerman and S.C. Harvey
J. Mol. Biol. 309, 727-735 (2001)
(PDF) 485,000

Coordinates
(PDB) 87,051

AA.AG@helix.ends: A:A and A:G Basepairs at the Ends of 16S and 23S rRNA Helices
T. Elgavish, J.J. Cannone, J.C. Lee, S.C. Harvey and R.R. Gutell
J. Mol. Biol. 310, 735-753 (2001)

(PDF)

A Standard Reference Frame for the Description of Nucleic Acid Base-Pair Geometry
W.K. Olson, M. Bansal, S.K. Burley, R.E. Dickerson, M. Gerstein, S.C. Harvey, U. Heinemann, X.-J. Lu, S. Neidle, Z. Shakked, H. Sklenar, M. Suzuki, C.-S. Tung, E. Westhof, C. Wolberger and H.M. Berman
J. Mol. Biol. 313, 229-237 (2001)

(PDF)

Investigation of Viral DNA Packaging Using Molecular Mechanics Models
J. Arsuaga, R.K.-Z. Tan, M. Vazquez, D.W. Sumners and S.C. Harvey
Biophys. Chem. 101-102, 475-484 (2002)

(PDF) 1,518,995

Building a Minimal Ribosome Based on Comparative Sequence Analysis
Jason A. Mears, Jamie J. Cannone, Scott M. Stagg, Robin R. Gutell, Rajendra K. Agrawal, and Stephen C. Harvey
J. Mol. Biol. 321, 215-234 (2002)

(PDF) 1,019,738

Movies (MOV)

RNAML: A Standard Syntax for Exchanging RNA Information
A. Waugh, P. Gendron., R. Altman, J.W. Brown, D. Case, D. Gautheret, S.C. Harvey, J. Westbrook, E. Westhof, M. Zuker and F. Major
RNA 8, 707-717 (2002)

(PDF)

Identification of the Proteoglycan Binding Site in Apolipoprotein B48
C. Flood, M. Gustafsson, P.E. Richardson, S.C. Harvey, J.P. Segrest and J. Borén
J. Biol. Chem. 277, 32228-32233 (2002)

(PDF)

Comparative Models for Human Apolipoprotein A-I Bound to Lipid in Discoidal High-Density Lipoprotein Particles
A.E. Klon, J.P. Segrest and S.C. Harvey
Biochemistry 41, 10895-10905 (2002)

(PDF)

Molecular Dynamics Simulations on Discoidal HDL Particles Suggest a Mechanism for Rotation in the Apo A-I Belt Model
A.E. Klon, J.P. Segrest and S.C. Harvey
J. Mol. Biol. 324, 703-721 (2002)

(PDF)

Problems with the Transorientation Hypothesis
S.M. Stagg, M. Valle, J. Frank and S.C. Harvey
RNA 8, 1093-1094 (2002)

(PDF)

Investigation of Viral DNA Packaging Using Molecular Mechanics Models
J. Arsuaga, R.K.Z. Tan, M. Vazquez, D.W. Sumners and S.C. Harvey
Biophys. Chem. 101-102:475-84(2002)

(PDF)

Motifs in Nucleic Acids: Molecular Mechanics Restraints for Base Pairing and Base Stacking
S.C. Harvey, C. Wang, S. Teletchea and R. Lavery
J. Comput. Chem. 24(1):1-9 (2003)

(PDF)

The Calcium-Saturated cTnI/cTnC Complex: Structure of the Inhibitory Region of cTnI
C. Sheldahl, J. Xing, W.J. Dong, S.C. Harvey and H.C. Cheung
Biophys. J. 84, 1057-1064 (2003)

(PDF)

A Structural Model for the Assembly of the 30S Subunit of the Ribosome
S.M. Stagg, J.A. Mears and S.C. Harvey
J. Mol. Biol. 328, 49-61 (2003).

(PDF)

Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real Space Refinement
H. Gao, J. Sengupta, M. Valle, A. Korostelev, N. Eswar, S.M. Stagg, P. VanRoey, R.K. Agrawal, S.C. Harvey, A. Sali, M.S. Chapman and J. Frank
Cell 113, 789-801 (2003).

(PDF)

Probing the Importance of tRNA Anticodon:HIV-1 Viral RNA Genome Complementarity Using an HIV-1 that Selects tRNAGlu for Replication
L.C. Dupuy, T.E. Elgavish, S.C. Harvey and C.D. Morrow
J. Virol. 77, 8756-8764 (2003)

(PDF)

Incorporation of Aminoacyl-tRNA into the Ribosome as Seen by Cryo-EM
M. Valle, A. Zavialov, W. Li, S.M. Stagg, J. Sengupta, R.C. Nielsen, P. Nissen, S.C. Harvey, M. Ehrenberg and J. Frank
Nature Struct. Biol. 10, 899-906 (2003)

(PDF)

The Getcolumn in the table contains links. Click on the PDF icon to read the article or right-click to download.Journal: opens a separate window to the journal article or the abstract; the abstract page will usually contain links to the article in various formats.Reprint: Please do not use it; write to us if you have no other way of getting a reprint.Preprint: download a PDF pre-print.Coordinates: download a PDB coordinate file. Structures: go to a page to download supplementary material.Program: download program source code.If the links do not work as expected (such as when the contents appear in your browser's window) please study thisnote(which will appear in a separate window; not updated since the last millenium).

Paper	Get	(Type) Size [bytes]
Structural Studies of the tRNA Domain of tmRNA S.M. Stagg, A.A. Frazer-Abel, P.J. Hagerman and S.C. Harvey J. Mol. Biol. 309, 727-735 (2001)		(PDF) 485,000
	Coordinates	(PDB) 87,051
AA.AG@helix.ends: A:A and A:G Basepairs at the Ends of 16S and 23S rRNA Helices T. Elgavish, J.J. Cannone, J.C. Lee, S.C. Harvey and R.R. Gutell J. Mol. Biol. 310, 735-753 (2001)		(PDF)
A Standard Reference Frame for the Description of Nucleic Acid Base-Pair Geometry W.K. Olson, M. Bansal, S.K. Burley, R.E. Dickerson, M. Gerstein, S.C. Harvey, U. Heinemann, X.-J. Lu, S. Neidle, Z. Shakked, H. Sklenar, M. Suzuki, C.-S. Tung, E. Westhof, C. Wolberger and H.M. Berman J. Mol. Biol. 313, 229-237 (2001)		(PDF)
Investigation of Viral DNA Packaging Using Molecular Mechanics Models J. Arsuaga, R.K.-Z. Tan, M. Vazquez, D.W. Sumners and S.C. Harvey Biophys. Chem. 101-102, 475-484 (2002)		(PDF) 1,518,995
Building a Minimal Ribosome Based on Comparative Sequence Analysis Jason A. Mears, Jamie J. Cannone, Scott M. Stagg, Robin R. Gutell, Rajendra K. Agrawal, and Stephen C. Harvey J. Mol. Biol. 321, 215-234 (2002)		(PDF) 1,019,738
	Movies	(MOV)
RNAML: A Standard Syntax for Exchanging RNA Information A. Waugh, P. Gendron., R. Altman, J.W. Brown, D. Case, D. Gautheret, S.C. Harvey, J. Westbrook, E. Westhof, M. Zuker and F. Major RNA 8, 707-717 (2002)		(PDF)
Identification of the Proteoglycan Binding Site in Apolipoprotein B48 C. Flood, M. Gustafsson, P.E. Richardson, S.C. Harvey, J.P. Segrest and J. Borén J. Biol. Chem. 277, 32228-32233 (2002)		(PDF)
Comparative Models for Human Apolipoprotein A-I Bound to Lipid in Discoidal High-Density Lipoprotein Particles A.E. Klon, J.P. Segrest and S.C. Harvey Biochemistry 41, 10895-10905 (2002)		(PDF)
Molecular Dynamics Simulations on Discoidal HDL Particles Suggest a Mechanism for Rotation in the Apo A-I Belt Model A.E. Klon, J.P. Segrest and S.C. Harvey J. Mol. Biol. 324, 703-721 (2002)		(PDF)
Problems with the Transorientation Hypothesis S.M. Stagg, M. Valle, J. Frank and S.C. Harvey RNA 8, 1093-1094 (2002)		(PDF)
Investigation of Viral DNA Packaging Using Molecular Mechanics Models J. Arsuaga, R.K.Z. Tan, M. Vazquez, D.W. Sumners and S.C. Harvey Biophys. Chem. 101-102:475-84(2002)		(PDF)
Motifs in Nucleic Acids: Molecular Mechanics Restraints for Base Pairing and Base Stacking S.C. Harvey, C. Wang, S. Teletchea and R. Lavery J. Comput. Chem. 24(1):1-9 (2003)		(PDF)
The Calcium-Saturated cTnI/cTnC Complex: Structure of the Inhibitory Region of cTnI C. Sheldahl, J. Xing, W.J. Dong, S.C. Harvey and H.C. Cheung Biophys. J. 84, 1057-1064 (2003)		(PDF)
A Structural Model for the Assembly of the 30S Subunit of the Ribosome S.M. Stagg, J.A. Mears and S.C. Harvey J. Mol. Biol. 328, 49-61 (2003).		(PDF)
Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real Space Refinement H. Gao, J. Sengupta, M. Valle, A. Korostelev, N. Eswar, S.M. Stagg, P. VanRoey, R.K. Agrawal, S.C. Harvey, A. Sali, M.S. Chapman and J. Frank Cell 113, 789-801 (2003).		(PDF)
Probing the Importance of tRNA Anticodon:HIV-1 Viral RNA Genome Complementarity Using an HIV-1 that Selects tRNAGlu for Replication L.C. Dupuy, T.E. Elgavish, S.C. Harvey and C.D. Morrow J. Virol. 77, 8756-8764 (2003)		(PDF)
Incorporation of Aminoacyl-tRNA into the Ribosome as Seen by Cryo-EM M. Valle, A. Zavialov, W. Li, S.M. Stagg, J. Sengupta, R.C. Nielsen, P. Nissen, S.C. Harvey, M. Ehrenberg and J. Frank Nature Struct. Biol. 10, 899-906 (2003)		(PDF)