2004 to 2006

Harvey Lab Publications: 2004 - 2006

Harvey Lab. Publications
1972...1997

1998...2000

2001...2003

2004...2006
Current

The Harvey Lab

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(Type) Size [bytes]

Packaging Double-Helical DNA into Viral Capsids.
J.C. LaMarque, T.L. Le and S.C. Harvey
Biopolymers 73, 348-355 (2004)

(PDF)

Nodavirus Coat Protein Imposes Dodecahedral RNA Structure Independent of Nucleotide Sequence and Length.
M. Tihova, K.A. Dryden, T.L. Le, S.C. Harvey, J.E. Johnson, M. Yeager and A. Schneemann
J. Virol. 78, 2897-2905 (2004)

(PDF)

The Morphology of Steve.
E.S. Scott et al. (S.C. Harvey listed as one of ~443 authors)
Annals of Improbable Research, July/Aug, 2004, pp 24-29

(PDF)

Double Belt Structure of Discoidal High Density Lipoproteins: Molecular Basis for Size Heterogeneity.
L. Li, J. Chen, V.K. Mishra, J.A. Kurtz, D. Cao, A.E. Klon, S.C. Harvey, G.M. Anantharamaiah and J.P. Segrest
J. Mol. Biol. 343, 1293-1311 (2004)

(PDF)

The ENCODE (ENCyclopedia Of DNA Elements) Project.
The ENCODE Project Consortium (S.C. Harvey listed as one of ~197 authors)
Science 306, 636-640) (2004)

(PDF)

Assembly of Lipoprotein Particles Containing Apolipoprotein-B: Structural Model for the Nascent Lipoprotein Particle.
P.E. Richardson, M. Manchekar, N. Dashti, M.K. Jones, A. Beigneux, S.G. Young, S.C. Harvey and J.P. Segrest
Biophys. J. 88, 2789-2800 (2005)

(PDF)

Exploring the Flexibility of Ribosome Recycling Factor Using Molecular Dynamics.
S.M. Stagg and S.C. Harvey
Biophys. J. 89, 2659-2666 (2005)

(PDF)

The RNA Ontology Consortium: An Open Invitation to the RNA Community.
N.B. Leontis, R.B. Altman, H.M. Berman, S.E. Brenner, J.W. Brown, D.R. Engelke, S.C. Harvey, S.R. Holbrook, F. Jossinet, S.E. Lewis, F. Major, D.H. Mathews, J.S. Richardson, J.R. Williamson and E. Westhof
RNA 12, 533-541 (2006)

(PDF)

A Structural Model of the Mitochondrial Ribosome.
J.A. Mears, M.R. Sharma, R.R. Gutell, A.S. McCook, P.E. Richardson, T.R. Caulfield, R.K. Agrawal and S.C. Harvey
J. Mol. Biol. 358, 193-212 (2006)

(PDF)

YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
R. K.-Z. Tan, A.S. Petrov and S.C. Harvey
J. Chem. Theory and Comput. 2, 529-540 (2006).

(PDF)

Novel Changes in Discoidal High Density Lipoprotein Morphology: A Molecular Dynamics Study.
A. Catte, J.C. Patterson, M.K. Jones, W.G. Jerome, D. Bashtovyy, Z. Su, F. Gu, J. Chen, M.P. Aliste, S.C. Harvey, L. Li, G. Weinstein and J.P. Segrest
Biophys. J. 90, 4345-4360 (2006)

(PDF)

DNA-Directed Assembly of Polyanilines: Modified Cytosine Nucleotides Transfer Sequence Programmability to a Conjoined Polymer.
B. Datta, G.B. Schuster, A. McCook, S.C. Harvey and K. Zakrzewska
J. Amer. Chem. Soc. 128, 14428-14429 (2006)

(PDF)

Low-Resolution Molecular Dynamics Simulations of the 30S Ribosomal Subunit.
Q. Cui, R.K-Z. Tan, S.C. Harvey and D.A. Case
Multiscale Modeling and Simul. 5, 1248-1263 (2006)

(PDF) 743,298

A Model for Viral Genome Packing.
C.R. Locker and S.C. Harvey
Multiscale Modeling Simul. 5, 1264-1279 (2006)
(PDF) 381,252

The Getcolumn in the table contains links. Click on the PDF icon to read the article or right-click to download.Journal: opens a separate window to the journal article or the abstract; the abstract page will usually contain links to the article in various formats.Reprint: Please do not use it; write to us if you have no other way of getting a reprint.Preprint: download a PDF pre-print.Coordinates: download a PDB coordinate file. Structures: go to a page to download supplementary material.Program: download program source code.If the links do not work as expected (such as when the contents appear in your browser's window) please study thisnote(which will appear in a separate window; not updated since the last millenium).

Paper	Get	(Type) Size [bytes]
Packaging Double-Helical DNA into Viral Capsids. J.C. LaMarque, T.L. Le and S.C. Harvey Biopolymers 73, 348-355 (2004)		(PDF)
Nodavirus Coat Protein Imposes Dodecahedral RNA Structure Independent of Nucleotide Sequence and Length. M. Tihova, K.A. Dryden, T.L. Le, S.C. Harvey, J.E. Johnson, M. Yeager and A. Schneemann J. Virol. 78, 2897-2905 (2004)		(PDF)
The Morphology of Steve. E.S. Scott et al. (S.C. Harvey listed as one of ~443 authors) Annals of Improbable Research, July/Aug, 2004, pp 24-29		(PDF)
Double Belt Structure of Discoidal High Density Lipoproteins: Molecular Basis for Size Heterogeneity. L. Li, J. Chen, V.K. Mishra, J.A. Kurtz, D. Cao, A.E. Klon, S.C. Harvey, G.M. Anantharamaiah and J.P. Segrest J. Mol. Biol. 343, 1293-1311 (2004)		(PDF)
The ENCODE (ENCyclopedia Of DNA Elements) Project. The ENCODE Project Consortium (S.C. Harvey listed as one of ~197 authors) Science 306, 636-640) (2004)		(PDF)
Assembly of Lipoprotein Particles Containing Apolipoprotein-B: Structural Model for the Nascent Lipoprotein Particle. P.E. Richardson, M. Manchekar, N. Dashti, M.K. Jones, A. Beigneux, S.G. Young, S.C. Harvey and J.P. Segrest Biophys. J. 88, 2789-2800 (2005)		(PDF)
Exploring the Flexibility of Ribosome Recycling Factor Using Molecular Dynamics. S.M. Stagg and S.C. Harvey Biophys. J. 89, 2659-2666 (2005)		(PDF)
The RNA Ontology Consortium: An Open Invitation to the RNA Community. N.B. Leontis, R.B. Altman, H.M. Berman, S.E. Brenner, J.W. Brown, D.R. Engelke, S.C. Harvey, S.R. Holbrook, F. Jossinet, S.E. Lewis, F. Major, D.H. Mathews, J.S. Richardson, J.R. Williamson and E. Westhof RNA 12, 533-541 (2006)		(PDF)
A Structural Model of the Mitochondrial Ribosome. J.A. Mears, M.R. Sharma, R.R. Gutell, A.S. McCook, P.E. Richardson, T.R. Caulfield, R.K. Agrawal and S.C. Harvey J. Mol. Biol. 358, 193-212 (2006)		(PDF)
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models. R. K.-Z. Tan, A.S. Petrov and S.C. Harvey J. Chem. Theory and Comput. 2, 529-540 (2006).		(PDF)
Novel Changes in Discoidal High Density Lipoprotein Morphology: A Molecular Dynamics Study. A. Catte, J.C. Patterson, M.K. Jones, W.G. Jerome, D. Bashtovyy, Z. Su, F. Gu, J. Chen, M.P. Aliste, S.C. Harvey, L. Li, G. Weinstein and J.P. Segrest Biophys. J. 90, 4345-4360 (2006)		(PDF)
DNA-Directed Assembly of Polyanilines: Modified Cytosine Nucleotides Transfer Sequence Programmability to a Conjoined Polymer. B. Datta, G.B. Schuster, A. McCook, S.C. Harvey and K. Zakrzewska J. Amer. Chem. Soc. 128, 14428-14429 (2006)		(PDF)
Low-Resolution Molecular Dynamics Simulations of the 30S Ribosomal Subunit. Q. Cui, R.K-Z. Tan, S.C. Harvey and D.A. Case Multiscale Modeling and Simul. 5, 1248-1263 (2006)		(PDF) 743,298
A Model for Viral Genome Packing. C.R. Locker and S.C. Harvey Multiscale Modeling Simul. 5, 1264-1279 (2006)		(PDF) 381,252