Programming Manual

Programming Manual for Developers. End-users should consult the User Manual, expert users should consult the Technical Documentation. This manual documents the source code (both C and Python).

INTRODUCTION

Introduction to the source code. The program's view of molecular mechanics.

THE TARO MODULE

Index to the source code of the taro module presented in alphabetical order and in module order. [Taro]

THE YAMMP MODULE

The yammp module is written entirely in C. This is an alphabetic and module index to the source code. The Yammp program is a very short shell script that imports the yammp module and processes user commands. [Yammp]

YAMMPSCRIPTER

YammpScripter is a very short shell script that creates an instance of the ympshell object. This is an index to the objects referenced by YammpScripter. [YammpScripter]

PACKAGE STRUCTURE

The various Python modules and shared library object files are organized in a Python package. [Package]

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