Technical Documentation
SCRIPTING THE YAMMP MODULE: editnonbonds()

The Modify functions described in this page can be called only after the setup() function. Modify functions can be mixed with calls to the Run functions.

Specifying a keyword value will store that value in association with the keyword and for the associated Run function. For example, editdynamics() modifies settings for the dynamics() function; the settings are changed but have no effect until dynamics() is called. The settings remain unchanged until changed again by a call to the Modify function.

Function
Summary
Return Values
editnonbonds()
Modify the Nonbond functions
#0
Keyword
Argument
Type or Values
Interpretation
Initial Value
dielelectric
#2
Float
dielectric constant
1
power
#2
1, 2
exponent: 1 = constant-, 2 = distance-dependent dielectric
1
scale
#2
Float
scaling factor (ele+)
0.5
vlatscale
#2
Float
VLAT global scaling factor
1
cut_off
#2
Float
cutoff distance for electrostatics and VdW [Å]
#3
trim_on
#2
Float
trimming starts for electrostatics and VdW [Å]
#3
trim_off
#2
Float
trimming stops for electrostatics and VdW [Å]
#3
trim_type
#2
"none", "shift", "switch"
trimming function for electrostatics and VdW
#3
ele_cut_off
#2
Float
cutoff distance for electrostatics [Å]
13
ele_trim_on
#2
Float
trimming starts for electrostatics [Å]
11
ele_trim_off
#2
Float
trimming stops for electrostatics [Å]
12
ele_trim_type
#2
"none", "shift", "switch"
trimming function for electrostatics
"none"
vdw_cut_off
#2
Float
cutoff distance for VdW [Å]
13
vdw_trim_on
#2
Float
trimming starts for VdW [Å]
11
vdw_trim_off
#2
Float
trimming stops for VdW [Å]
12
vdw_trim_type
#2
"none", "shift", "switch"
trimming function for VdW
"none"

Notes:
#0 : none or no value
#1 : this argument must always be specified
#2 : this argument is optional
#3 : not applicable

Introduction
Python
Examples

setup()
setenviron()
editdynamics()
editminimizers()
editlinesearch()
editmontecarlo()
editnonbonds()
editconstraint()
editcontra()
Run

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